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Acyr_2.0

Organism name:
Acyrthosiphon pisum (pea aphid)
Infraspecific name:
Strain: LSR1
BioSample:
SAMN00000061
Submitter:
Baylor College of Medicine
Date:
2010/06/24
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000142985.2 (latest)
RefSeq assembly accession:
GCF_000142985.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
ABLF02
Assembly method:
Newbler v. 2.3-PreRelease-09142009; phrap version 1.080812; atlas-link0.5; atlas-overlapper-1.70
Genome coverage:
15x
Sequencing technology:
Sanger; 454

IDs: 246238 [UID] 165438 [GenBank] 246238 [RefSeq]

See Genome Information for Acyrthosiphon pisum

History (Show revision history)

Comment

Acyr_2.0 is a draft assembly of the pea aphid, Acyrthosiphon pisum, using whole genome shotgun (WGS) reads from small insert clones as well as BAC end sequences and 454 reads assembled with the Atlas genome assembly system at the ... Baylor College of Medicine Human Genome Sequencing Center.

For more information, see http://www.hgsc.bcm.tmc.edu  more

Global statistics

Total sequence length541,692,442
Total assembly gap length41,784,240
Gaps between scaffolds0
Number of scaffolds23,925
Scaffold N50518,546
Scaffold L50280
Number of contigs60,596
Contig N5028,199
Contig L504,435
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced541,675,47123,924499,891,231518,54636,6710
MoleculeTotal
Length
Mitochondrion MT16,971