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ASM17325v2

Organism name:
Lactobacillus rhamnosus HN001 (firmicutes)
Infraspecific name:
Strain: HN001
BioSample:
SAMN02469790
Submitter:
Fonterra Research Centre
Date:
2008/09/12
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000173255.2 (latest)
RefSeq assembly accession:
GCF_000173255.4 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ABWJ01

IDs: 359161 [UID] 444818 [GenBank] 1852528 [RefSeq]

See Genome Information for Lactobacillus rhamnosus

There are 102 assemblies for this organism

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History (Show revision history)

Comment

Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
DNASource: Michael Collett Fonterra Research Centre Palmerston North, New Zealand; michael.collett@fonterra.com
This version of the ... project represents 36x coverage of the genome
The complete plasmids pLR001 and pLR002 were deposited in GenBank Accession Numbers CP001155 and CP001156, respectively.  more

Global statistics

Total sequence length2,914,408
Total assembly gap length15
Gaps between scaffolds0
Number of scaffolds96
Scaffold N5075,199
Scaffold L5014
Number of contigs97
Contig N5075,199
Contig L5014
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCF_000173265.4)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Plasmid pLR001CP001155.1=NC_011223.10
Plasmid pLR002CP001156.1=NC_011225.10
unplacedn/an/an/a94

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Plasmid pLR0018,75418,7548,75400
Plasmid pLR00231,548131,54831,54800
unplaced2,874,106942,874,09178,10510