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Helobdella robusta v1.0

Organism name:
Helobdella robusta (segmented worms)
BioSample:
SAMN02769625
Submitter:
DOE Joint Genome Institute
Date:
2012/12/20
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000326865.1 (latest)
RefSeq assembly accession:
GCF_000326865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMQM01
Assembly method:
JGI Jazz v. 01/29/2007
Genome coverage:
7.92x
Sequencing technology:
Sanger

IDs: 529088 [UID] 529088 [GenBank] 1195338 [RefSeq]

See Genome Information for Helobdella robusta

History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Helro1
JGI Project ID: 200148
The DNA was provided by Daniel Rokshar(dsrokhsar@lbl.gov)
The strain is available from Daniel Rokshar
Contacts: Daniel Rokshar (dsrokhsar@lbl.gov)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use of large ... scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)

Annotation was added to the scaffolds in October 2013  more

Global statistics

Total sequence length235,376,169
Total assembly gap length19,939,602
Gaps between scaffolds0
Number of scaffolds1,991
Scaffold N503,060,193
Scaffold L5021
Number of contigs12,292
Contig N5052,195
Contig L501,173
Total number of chromosomes and plasmids0

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced235,376,1691,991215,436,5673,060,19310,3010