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Umaydis521_2.0

Organism name:
Ustilago maydis 521
Infraspecific name:
Strain: 521
BioSample:
SAMN02900459
Submitter:
Broad Institute
Date:
2015/02/18
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000328475.2 (latest)
RefSeq assembly accession:
GCF_000328475.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AACP02
Assembly method:
Arachne v. May-2005
Genome coverage:
10.0x
Sequencing technology:
Sanger

IDs: 272671 [UID] 1580578 [GenBank] 1636368 [RefSeq]

See Genome Information for Ustilago maydis

History (Show revision history)

Global statistics

Total sequence length19,664,356
Total assembly gap length22,700
Gaps between scaffolds0
Number of scaffolds27
Scaffold N50884,984
Scaffold L507
Number of contigs254
Contig N50129,796
Contig L5047
Total number of chromosomes and plasmids23

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCF_000328485.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM003140.1=NC_026478.10
Chromosome 2CM003141.1=NC_026479.10
Chromosome 3CM003142.1=NC_026480.10
Chromosome 4CM003143.1=NC_026481.10
Chromosome 5CM003144.1=NC_026482.10
Chromosome 6CM003145.1=NC_026483.10
Chromosome 7CM003146.1=NC_026484.10
Chromosome 8CM003147.1=NC_026485.10
Chromosome 9CM003148.1=NC_026486.10
Chromosome 10CM003149.1=NC_026487.10
Chromosome 11CM003150.1=NC_026488.10
Chromosome 12CM003151.1=NC_026489.10
Chromosome 13CM003152.1=NC_026490.10
Chromosome 14CM003153.1=NC_026491.10
Chromosome 15CM003154.1=NC_026492.10
Chromosome 16CM003155.1=NC_026493.10
Chromosome 17CM003156.1=NC_026494.10
Chromosome 18CM003157.1=NC_026495.10
Chromosome 19CM003158.1=NC_026496.10
Chromosome 20CM003159.1=NC_026497.10
Chromosome 21CM003160.1=NC_026498.10
Chromosome 22CM003161.1=NC_026499.10
Chromosome 23CM003162.1=NC_026500.10
unplacedn/an/an/a4

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 12,476,50112,473,9012,476,501260
Chromosome 21,879,39111,877,0911,879,391230
Chromosome 31,642,07011,640,1701,642,070190
Chromosome 4884,9841883,984884,984100
Chromosome 51,393,41911,392,5191,393,41990
Chromosome 61,031,38011,030,0801,031,380130
Chromosome 7957,1881956,088957,188110
Chromosome 8813,2471812,347813,24790
Chromosome 9733,9621733,262733,96270
Chromosome 10692,3541691,754692,35460
Chromosome 11690,6201689,620690,620100
Chromosome 12650,9841650,284650,98470
Chromosome 13606,0721604,972606,072110
Chromosome 14611,4671610,767611,46770
Chromosome 15575,4181574,818575,41860
Chromosome 16552,7671551,967552,76780
Chromosome 17576,6281575,828576,62880
Chromosome 18560,7241559,924560,72480
Chromosome 19571,8091571,409571,80940
Chromosome 20523,8841522,884523,884100
Chromosome 21470,5051469,705470,50580
Chromosome 22403,5901403,190403,59040
Chromosome 23344,9271344,627344,92730
unplaced20,465420,4655,34300