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ASM14374v1

Organism name:
Lactobacillus plantarum subsp. plantarum ATCC 14917
Infraspecific name:
Strain: ATCC 14917
BioSample:
SAMN00001478
Submitter:
Baylor College of Medicine
Date:
2010/07/22
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000143745.1 (latest)
RefSeq assembly accession:
GCF_000143745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACGZ02
Assembly method:
Newbler Assembler v. 1.1.03.24_64
Genome coverage:
36x
Sequencing technology:
454

IDs: 236218 [UID] 232148 [GenBank] 236218 [RefSeq]

See Genome Information for Lactobacillus plantarum

There are 26 assemblies for this organism

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History (Show revision history)

Comment

Lactobacillus plantarum subsp. plantarum ATCC 14917

 Strain source, body site: Gastrointestinal tract

 This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by American Type Culture ... Collection (ATCC14917). Funded by "Genomes and Genetics at BCM-HGSC" (U54 HG003273).  more

Global statistics

Total sequence length3,212,261
Total assembly gap length13,500
Gaps between scaffolds0
Number of scaffolds9
Scaffold N50554,392
Number of contigs36
Contig N50152,365
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCF_000143755.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome n/an/an/a9

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome AllAssembled moleculeUnlocalized scaffolds3,212,26103,212,2619093,198,76103,198,761554,3920554,39227027000