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ASM15917v1

Organism name:
Lactobacillus brevis subsp. gravesensis ATCC 27305
Infraspecific name:
Strain: ATCC 27305
BioSample:
SAMN00001468
Submitter:
Baylor College of Medicine
Date:
2009/05/28
Assembly level:
Scaffold
Genome representation:
full
GenBank Assembly ID:
GCA_000159175.1 (latest)
RefSeq Assembly ID:
GCF_000159175.1 (latest)
RefSeq Assembly and GenBank Assembly Identical:
yes
WGS Project:
ACGG01

IDs: 189138 [UID] 189118 [GenBank] 189138 [RefSeq]

See Genome Information for Lactobacillus brevis

There are 6 assemblies for this organism

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History (Show revision history)

Comment

This sequence is generated as a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious ... Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease. See http://www.hmpdacc.org/ for more information.
The sequenced strain was obtained from ATCC. The genomic DNA was prepared from a single bacterial isolate. The sequence generated included at least 10 fold coverage of Roche/454 Lifesciences FLX fragment data, at least 8 fold clone coverage of Roche/454 Lifesciences paired-end data and at least 10 fold coverage of Illumina/Solexa data.
The Roche/454 Lifesciences sequence was assembled using the Roche/454 Lifescience Newbler assembler. The contigs from the Newbler assembly were aligned to the Illumina/Solexa data with mapping tools such as Mosaic and Crossmatch and these data were used for error correction for this version of the draft assembly. This draft assembly meets the HMP draft quality standards (more than 90% of the genome is included in contigs, more than 90% of a core set of bacterial genes are found with > 30% identity and > 30% length; more than 90% of the bases in the assembly have more than 5 fold sequence coverage, the contig N50 length is greater than 5kb, the scaffold N50 length is greater than 20kb, and there is less than 1 gap per 5kb).
This is a reference genome for the Human Microbiome Project.
This project is co-owned with the Human Microbiome Project DACC.
Genome Coverage: 29x
Sequencing Technology: 454; ABI; Solexa/Illumina

Annotation was added to the contigs in April 2009.
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Global statistics

Total sequence length3,144,656
Total assembly gap length66,941
Gaps between scaffolds0
Number of scaffolds106
Scaffold N50737,616
Number of contigs178
Contig N5095,113
Total number of chromosomes and plasmids0

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,144,6561063,077,715737,616720
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