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IMG-taxon 2698536752 annotated assembly

Organism name:
Flavobacterium saccharophilum (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 1811
BioSample:
SAMN05444366
BioProject:
PRJEB18383
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/12/03
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900142735.1 (latest)
RefSeq assembly accession:
GCF_900142735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FRBY01
Genome coverage:
237x

IDs: 909441 [UID] 3776508 [GenBank] 3839868 [RefSeq]

See Genome Information for Flavobacterium saccharophilum

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length5,209,309
Total ungapped length5,209,309
Number of contigs14
Contig N50766,213
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,209,309145,209,309766,21300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Flavobacterium saccharophilumFlavobacterium saccharophilum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002217275.1Flavobacterium frigidimaristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.3068.9566.25

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected