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IMG-taxon 2599185263 annotated assembly

Organism name:
Chitinimonas taiwanensis DSM 18899 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 18899
BioSample:
SAMN02745887
BioProject:
PRJEB17966
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900119825.1 (latest)
RefSeq assembly accession:
GCF_900119825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FPKR01
Genome coverage:
112x

IDs: 895951 [UID] 3748168 [GenBank] 3814728 [RefSeq]

See Genome Information for Chitinimonas taiwanensis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length4,075,245
Total ungapped length4,074,648
Gaps between scaffolds0
Number of scaffolds29
Scaffold N50259,756
Scaffold L506
Number of contigs30
Contig N50259,756
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)29

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,075,245294,074,648259,75610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Chitinimonas taiwanensis DSM 18899Chitinimonas taiwanensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014353015.1Chitinimonas koreensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.7322.4816.21

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected