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IMG-taxon 2684623041 annotated assembly

Organism name:
Pasteurella multocida (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 51689
BioSample:
SAMN05421675
BioProject:
PRJEB17254
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900115485.1 (latest)
RefSeq assembly accession:
GCF_900115485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOWO01
Genome coverage:
652x

IDs: 883131 [UID] 3706008 [GenBank] 3912418 [RefSeq]

See Genome Information for Pasteurella multocida

Pathogen Detection Resources

There are 1554 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,269,999
Total ungapped length2,269,668
Gaps between scaffolds0
Number of scaffolds14
Scaffold N50298,439
Scaffold L503
Number of contigs16
Contig N50236,869
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,269,999142,269,668298,43920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pasteurella multocidaPasteurella multocida

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636625.1Pasteurella multocida subsp. gallicidatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636625.1Pasteurella multocidatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9697.56
Best-match type99.9999.9697.56

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna