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IMG-taxon 2667527392 annotated assembly

Organism name:
Herbiconiux ginsengi (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 4.3491
BioSample:
SAMN05216554
BioProject:
PRJEB16623
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900107435.1 (latest)
RefSeq assembly accession:
GCF_900107435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNPZ01
Genome coverage:
123x

IDs: 868821 [UID] 3642998 [GenBank] 4886188 [RefSeq]

See Genome Information for Herbiconiux ginsengi

History (Show revision history)

Comment

Global statistics

Total sequence length4,853,715
Total ungapped length4,852,655
Gaps between scaffolds0
Number of scaffolds12
Scaffold N50949,525
Scaffold L502
Number of contigs14
Contig N50778,937
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,853,715124,852,655949,52520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Herbiconiux ginsengiHerbiconiux ginsengi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024979235.1Herbiconiux aconitumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.9654.5263.59

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected