Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

IMG-taxon 2634166335 annotated assembly

Organism name:: Arcanobacterium phocae (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: DSM 10002
BioSample:: SAMN04489737
BioProject:: PRJEB16468
Submitter:: DOE - JOINT GENOME INSTITUTE
Date:: 2016/10/21
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_900105865.1 (latest)
RefSeq assembly accession:: GCF_900105865.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 882x

IDs: 866661 [UID] 3638668 [GenBank] 4878248 [RefSeq]

See Genome Information for Arcanobacterium phocae

Pathogen Detection Resources

There are 43 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900105865.1	=	GCF_900105865.1	IMG-taxon 2634166335 annotated assembly	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 01:37:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,805
CDSs (total)::1,738
Genes (coding)::1,724
CDSs (with protein)::1,724
Genes (RNA)::67
rRNAs::4, 6, 4 (5S, 16S, 23S)
complete rRNAs::4, 6, 4 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::4 of 14
Pseudo Genes (incomplete)::9 of 14
Pseudo Genes (internal stop)::3 of 14
Pseudo Genes (multiple problems)::2 of 14
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,998,342
Total ungapped length	1,998,242
Gaps between scaffolds	0
Number of scaffolds	1
Scaffold N50	1,998,342
Scaffold L50	1
Number of contigs	1
Contig N50	1,998,242
Contig L50	1
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	85.28	25.63	25.76

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

IMG-taxon 2634166335 annotated assembly

See Genome Information for Arcanobacterium phocae

Pathogen Detection Resources

There are 43 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result