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ASM222263v1

Organism name:
Pseudosulfitobacter pseudonitzschiae (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SMR1
BioSample:
SAMN07316509
BioProject:
PRJNA380207
Submitter:
University of Gothenburg
Date:
2017/07/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002222635.1 (latest)
RefSeq assembly accession:
GCF_002222635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
FALCON v. 1.7.5
Genome coverage:
166.75x
Sequencing technology:
PacBio

IDs: 1155471 [UID] 4786648 [GenBank] 4831468 [RefSeq]

See Genome Information for Pseudosulfitobacter pseudonitzschiae

Pathogen Detection Resources

There are 167 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Adrian K. Clarke, Department of Biological and Environmental Sciences, University of Gothenburg.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/01/2023 09:19:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,009
CDSs (total)::4,956
Genes (coding)::4,831
CDSs (with protein)::4,831
Genes (RNA)::53
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::125
CDSs (without protein)::125
Pseudo Genes (ambiguous residues)::0 of 125
Pseudo Genes (frameshifted)::43 of 125
Pseudo Genes (incomplete)::106 of 125
Pseudo Genes (internal stop)::26 of 125
Pseudo Genes (multiple problems)::42 of 125
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,121,602
Total ungapped length5,121,602
Total number of chromosomes and plasmids8

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002222645.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP022415.1=NZ_CP022415.1
Plasmid pSMR1-1CP022416.1=NZ_CP022416.1
Plasmid pSMR1-2CP022417.1=NZ_CP022417.1
Plasmid pSMR1-3CP022418.1=NZ_CP022418.1
Plasmid pSMR1-4CP022419.1=NZ_CP022419.1
Plasmid pSMR1-5CP022420.1=NZ_CP022420.1
Plasmid pSMR1-6CP022421.1=NZ_CP022421.1
Plasmid pSMR1-7CP022422.1=NZ_CP022422.1

Assembly statistics

MoleculeTotal
Length
All5,121,602
Chromosome 3,572,445
Plasmid pSMR1-1428,095
Plasmid pSMR1-2292,917
Plasmid pSMR1-3284,777
Plasmid pSMR1-4209,222
Plasmid pSMR1-5142,107
Plasmid pSMR1-699,245
Plasmid pSMR1-792,794

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudosulfitobacter pseudonitzschiaePseudosulfitobacter pseudonitzschiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900129395.1Pseudosulfitobacter pseudonitzschiaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900129395.1Pseudosulfitobacter pseudonitzschiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type85.0458.8060.82
Best-match type85.0458.8060.82

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna