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ASM221178v1

Organism name:
Francisella halioticida (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 23729
BioSample:
SAMN07207140
BioProject:
PRJNA389776
Submitter:
Swedish Defence Research Agency (FOI)
Date:
2017/06/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002211785.1 (latest)
RefSeq assembly accession:
GCF_002211785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. MAY-2017
Genome coverage:
300x
Sequencing technology:
Illumina MiSeq; PacBio

IDs: 1142311 [UID] 4640538 [GenBank] 4645238 [RefSeq]

See Genome Information for Francisella halioticida

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002211785.1-RS_2024_03_28
Annotation Date::03/28/2024 02:48:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,459
CDSs (total)::2,405
Genes (coding)::2,261
CDSs (with protein)::2,261
Genes (RNA)::54
rRNAs::4, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 3, 3 (5S, 16S, 23S)
tRNAs::40
ncRNAs::4
Pseudo Genes (total)::144
CDSs (without protein)::144
Pseudo Genes (ambiguous residues)::0 of 144
Pseudo Genes (frameshifted)::68 of 144
Pseudo Genes (incomplete)::78 of 144
Pseudo Genes (internal stop)::49 of 144
Pseudo Genes (multiple problems)::45 of 144
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,197,430
Total ungapped length2,197,430
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002211795.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP022132.1=NZ_CP022132.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,197,430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Francisella halioticidaFrancisella halioticida

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001895265.1Francisella uliginistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.6058.2457.20

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected