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ASM210209v1

Organism name:
Mycobacterium conspicuum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 44136
BioSample:
SAMN04216921
BioProject:
PRJNA299467
Submitter:
University of Trento
Date:
2017/04/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002102095.1 (latest)
RefSeq assembly accession:
GCF_002102095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LQOR01
Assembly method:
Spades v. 3.5.0
Expected final version:
yes
Genome coverage:
81x
Sequencing technology:
Illumina HiSeq

IDs: 1076251 [UID] 4389198 [GenBank] 4404618 [RefSeq]

See Genome Information for Mycobacterium conspicuum

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/11/2016 13:48:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,695
CDS (total)::5,640
Genes (coding)::5,457
CDS (coding)::5,457
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::183
Pseudo Genes (ambiguous residues)::0 of 183
Pseudo Genes (frameshifted)::35 of 183
Pseudo Genes (incomplete)::152 of 183
Pseudo Genes (internal stop)::4 of 183
Pseudo Genes (multiple problems)::8 of 183
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,200,614
Total ungapped length6,200,614
Number of contigs92
Contig N50221,692
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)92

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,200,614926,200,614221,69200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium conspicuumMycobacterium conspicuum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010730195.1Mycobacterium conspicuumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010730195.1Mycobacterium conspicuumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.6299.03
Best-match type99.9899.6299.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna