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ASM188043v1

Organism name:
Yersinia ruckeri (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Serotype: O1b
Infraspecific name:
Strain: 89/4243
BioSample:
SAMN04320390
BioProject:
PRJNA310959
Submitter:
The University of Queensland
Date:
2016/11/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001880435.1 (latest)
RefSeq assembly accession:
GCF_001880435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MDZO01
Assembly method:
SPAdes v. 3.7.1
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 890671 [UID] 3729598 [GenBank] 3735818 [RefSeq]

See Genome Information for Yersinia ruckeri

There are 197 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::08/29/2016 12:53:10
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::3.3
Genes (total)::3,389
CDS (total)::3,303
Genes (coding)::3,225
CDS (coding)::3,225
Genes (RNA)::86
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::68
ncRNAs::14
Pseudo Genes (total)::78
Pseudo Genes (ambiguous residues)::0 of 78
Pseudo Genes (frameshifted)::12 of 78
Pseudo Genes (incomplete)::65 of 78
Pseudo Genes (internal stop)::9 of 78
Pseudo Genes (multiple problems)::6 of 78
Assembly Method::SPAdes v. 3.7.1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,735,319
Total ungapped length3,735,319
Number of contigs86
Contig N50167,633
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)86

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,735,319863,735,319167,63300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia ruckeriYersinia ruckeri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000754815.1Yersinia ruckeri ATCC 29473type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000754815.1Yersinia ruckeritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8192.8491.95
Best-match type99.8192.8491.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna