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ASM159835v1

Organism name:: Sphingomonas asaccharolytica NBRC 15499 (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: NBRC 15499
BioSample:: SAMD00046753
BioProject:: PRJDB319
Submitter:: National Institute of Technology and Evaluation
Date:: 2016/03/11
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_001598355.1 (latest)
RefSeq assembly accession:: GCF_001598355.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: BCYU01
Assembly method:: newbler v. 3.0
Genome coverage:: 94x
Sequencing technology:: Illumina HiSeq 1000

IDs: 709611 [UID] 3141098 [GenBank] 3395518 [RefSeq]

See Genome Information for Sphingomonas asaccharolytica

Pathogen Detection Resources

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GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001598355.1	=	GCF_001598355.1	ASM159835v1	Contig	Latest GenBank, Latest RefSeq

Comment



Strain NBRC 15499 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).

The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length	4,608,803
Total ungapped length	4,608,803
Number of contigs	191
Contig N50	50,453
Contig L50	32
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	191

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	90.45	77.86	68.63

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ASM159835v1

See Genome Information for Sphingomonas asaccharolytica

Pathogen Detection Resources

History (Show revision history)

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