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ASM157637v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: G26
BioSample:
SAMN04334742
BioProject:
PRJNA305846
Submitter:
KOlimastIR
Date:
2016/02/26
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001576375.1 (latest)
RefSeq assembly accession:
GCF_001576375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LOOX01
Assembly method:
CLC genomics workbench v. 6
Expected final version:
yes
Genome coverage:
54.5x
Sequencing technology:
Illumina MiSeq

IDs: 649931 [UID] 2901078 [GenBank] 2911518 [RefSeq]

See Genome Information for Escherichia coli

There are 265830 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/24/2016 12:45:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,388
CDS (total)::5,291
Genes (coding)::4,990
CDS (coding)::4,990
Genes (RNA)::97
rRNAs::4, 1, 2 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::79
ncRNAs::11
Pseudo Genes (total)::301
Pseudo Genes (ambiguous residues)::2 of 301
Pseudo Genes (frameshifted)::38 of 301
Pseudo Genes (incomplete)::249 of 301
Pseudo Genes (internal stop)::27 of 301
Pseudo Genes (multiple problems)::15 of 301
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,308,409
Total ungapped length5,300,816
Gaps between scaffolds0
Number of scaffolds357
Scaffold N5074,377
Scaffold L5019
Number of contigs404
Contig N5049,669
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)357

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,308,4093575,300,81674,377470

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000210475.1Escherichia coli ETEC H10407claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210475.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1683.9583.55
Best-match type99.1683.9583.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna