U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM154991v1

Organism name:
Legionella pneumophila (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PtVF89/2014
BioSample:
SAMN03401156
BioProject:
PRJNA278005
Submitter:
National Institute of Health, Portugal
Date:
2016/02/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001549915.1 (latest)
RefSeq assembly accession:
GCF_001549915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LCUQ01
Assembly method:
Velvet v. 1.2.10
Expected final version:
yes
Genome coverage:
156.0x
Sequencing technology:
Illumina MiSeq

IDs: 636281 [UID] 2863798 [GenBank] 2866138 [RefSeq]

See Genome Information for Legionella pneumophila

There are 5728 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/10/2015 21:54:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,105
CDS::2,993
Pseudo Genes::67
CRISPR Arrays::1
rRNAs::3 (5S, 16S, 23S)
tRNAs::41
ncRNA::1
Frameshifted Genes::25
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,471,065
Total ungapped length3,470,991
Gaps between scaffolds0
Number of scaffolds57
Scaffold N50192,218
Scaffold L508
Number of contigs61
Contig N50155,636
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,471,065573,470,991192,21840

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella pneumophilaLegionella pneumophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900639965.1Legionella pneumophila subsp. fraseritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900639965.1Legionella pneumophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9894.6794.02
Best-match type98.9894.6794.02

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna