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Source database (GenBank or RefSeq) File type

ASM154771v1

Organism name:: Streptococcus pyogenes JRS4 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: JRS4
BioSample:: SAMD00061011
BioProject:: PRJDB114
Submitter:: Tokyo Medical and Dental University
Date:: 2015/04/04
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_001547715.1 (latest)
RefSeq assembly accession:: GCF_001547715.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.5.1; Phrap v. 1.090518; Consed v. 19.0
Genome coverage:: 150x
Sequencing technology:: Sanger; Roche 454

IDs: 635331 [UID] 2858998 [GenBank] 2861758 [RefSeq]

See Genome Information for Streptococcus pyogenes

Pathogen Detection Resources

There are 23527 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001547715.1	=	GCF_001547715.1	ASM154771v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 00:45:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,816
CDSs (total)::1,727
Genes (coding)::1,668
CDSs (with protein)::1,668
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::59
CDSs (without protein)::59
Pseudo Genes (ambiguous residues)::0 of 59
Pseudo Genes (frameshifted)::38 of 59
Pseudo Genes (incomplete)::22 of 59
Pseudo Genes (internal stop)::17 of 59
Pseudo Genes (multiple problems)::14 of 59
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,811,124
Total ungapped length	1,811,124
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	98.72	93.61	88.54
Best-match type	98.72	93.61	88.54

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ASM154771v1

See Genome Information for Streptococcus pyogenes

Pathogen Detection Resources

There are 23527 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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