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Burkholderia sp. LMG 29322

Organism name:
Caballeronia hypogeia (b-proteobacteria)
Taxonomy check:
OK
Isolate:
LMG 29322
BioSample:
SAMEA3731266
BioProject:
PRJEB12491
Submitter:
LM-UGent
Date:
2016/04/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001544875.2 (latest)
RefSeq assembly accession:
GCF_001544875.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FCOA02
Genome coverage:
50x

IDs: 732371 [UID] 3212928 [GenBank] 3241398 [RefSeq]

See Genome Information for Caballeronia hypogeia

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length8,333,271
Total ungapped length8,333,271
Number of contigs94
Contig N50213,920
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)94

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced8,333,271948,333,271213,92000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Caballeronia hypogeiaCaballeronia hypogeia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900044055.2Caballeronia calidaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2463.7855.31

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected