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Source database (GenBank or RefSeq) File type

ASM154248v2

Organism name:: Helicobacter pylori (e-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: UM400AR
BioSample:: SAMN04159033
BioProject:: PRJNA298418
Submitter:: University of Malaya-University of Western Australia
Date:: 2016/12/12
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_001542485.2 (latest)
RefSeq assembly accession:: GCF_001542485.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: LQNC02
Assembly method:: SPAdes v. 3.6.0
Expected final version:: yes
Genome coverage:: 98.0x
Sequencing technology:: Illumina MiSeq

IDs: 914071 [UID] 3786198 [GenBank] 3845078 [RefSeq]

See Genome Information for Helicobacter pylori

Pathogen Detection Resources

There are 4493 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001542485.2	=	GCF_001542485.2	ASM154248v2	Scaffold	Latest GenBank, Latest RefSeq
GCA_001542485.1	=	GCF_001542485.1	ASM154248v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Bacteria and source DNA available from Helicobacter Research Laboratory, High Impact Research, University of Malaya.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/31/2016 18:55:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,563
CDS (total)::1,521
Genes (coding)::1,430
CDS (coding)::1,430
Genes (RNA)::42
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::36
ncRNAs::3
Pseudo Genes (total)::91
Pseudo Genes (ambiguous residues)::0 of 91
Pseudo Genes (frameshifted)::53 of 91
Pseudo Genes (incomplete)::39 of 91
Pseudo Genes (internal stop)::12 of 91
Pseudo Genes (multiple problems)::13 of 91
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,608,513
Total ungapped length	1,607,925
Gaps between scaffolds	0
Number of scaffolds	58
Scaffold N50	45,209
Scaffold L50	10
Number of contigs	60
Contig N50	45,209
Contig L50	10
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	58

	ANI	Query coverage	Subject coverage
Declared type	95.02	93.59	89.53
Best-match type	95.02	93.59	89.53

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ASM154248v2

See Genome Information for Helicobacter pylori

Pathogen Detection Resources

There are 4493 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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