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12045_8#5

Organism name:
Serratia marcescens (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2880STDY5683010
BioSample:
SAMEA2274081
BioProject:
PRJEB5065
Submitter:
SC
Date:
2016/01/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001538465.1 (latest)
RefSeq assembly accession:
GCF_001538465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FCFS01
Genome coverage:
100x

IDs: 630501 [UID] 2832638 [GenBank] 2837088 [RefSeq]

See Genome Information for Serratia marcescens

Pathogen Detection Resources

There are 2569 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,167,735
Total ungapped length5,161,949
Gaps between scaffolds0
Number of scaffolds17
Scaffold N501,155,524
Scaffold L502
Number of contigs39
Contig N50283,924
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)17

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,167,735175,161,9491,155,524220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Serratia marcescensSerratia marcescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900457055.1Serratia marcescenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900457055.1Serratia marcescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.5285.8786.05
Best-match type95.5285.8786.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna