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ASM153573v1

Organism name:
Pseudomonas amygdali pv. morsprunorum (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2341
BioSample:
SAMN03992203
BioProject:
PRJNA287460
Submitter:
University of Edinburgh
Date:
2016/01/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001535735.1 (latest)
RefSeq assembly accession:
GCF_001535735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LIIB01
Assembly method:
SPAdes v. 2.4.0
Expected final version:
yes
Genome coverage:
102.0x
Sequencing technology:
Illumina MiSeq

IDs: 629141 [UID] 2829928 [GenBank] 2835928 [RefSeq]

See Genome Information for Pseudomonas amygdali

There are 118 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/19/2016 17:11:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,793
CDS (total)::5,721
Genes (coding)::5,437
CDS (coding)::5,437
Genes (RNA)::72
rRNAs::7, 1, 1 (5S, 16S, 23S)
complete rRNAs::7, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::284
Pseudo Genes (ambiguous residues)::0 of 284
Pseudo Genes (frameshifted)::101 of 284
Pseudo Genes (incomplete)::166 of 284
Pseudo Genes (internal stop)::48 of 284
Pseudo Genes (multiple problems)::26 of 284
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,282,231
Total ungapped length6,282,231
Number of contigs173
Contig N50169,197
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)173

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,282,2311736,282,231169,19700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas amygdali pv. morsprunorumPseudomonas amygdali

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022828345.1Pseudomonas amygdali pv. loropetalipathovar

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022828345.1Pseudomonas amygdalipathovar

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7887.9087.03
Best-match type98.7887.9087.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna