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ASM150616v1

Organism name:: Pantoea vagans (enterobacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: ND02
BioSample:: SAMN03068907
BioProject:: PRJNA261094
Submitter:: UNIVERSITY OF MALAYA
Date:: 2016/01/07
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_001506165.1 (latest)
RefSeq assembly accession:: GCF_001506165.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 3
Genome coverage:: 57.17x
Sequencing technology:: PacBio RSII

IDs: 614591 [UID] 2778048 [GenBank] 2781928 [RefSeq]

See Genome Information for Pantoea vagans

Pathogen Detection Resources

There are 31 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001506165.1	=	GCF_001506165.1	ASM150616v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Chan Kok Gan (Microbiome 3,Level 1, High Impact Research (HIR) Building,University of Malaya, Lembah Pantai,50603 ... Kuala Lumpur.)  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/16/2024 03:57:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,027
CDSs (total)::3,918
Genes (coding)::3,879
CDSs (with protein)::3,879
Genes (RNA)::109
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::80
ncRNAs::7
Pseudo Genes (total)::39
CDSs (without protein)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::18 of 39
Pseudo Genes (incomplete)::17 of 39
Pseudo Genes (internal stop)::9 of 39
Pseudo Genes (multiple problems)::6 of 39
Pseudo Genes (short protein)::1 of 39
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,313,264
Total ungapped length	4,313,264
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	81.66	33.90	30.53
Best-match type	86.54	85.36	64.02

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ASM150616v1

See Genome Information for Pantoea vagans

Pathogen Detection Resources

There are 31 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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