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Salmonella enterica CVM N38236-SQ v1.0

Organism name:
Salmonella enterica subsp. enterica serovar Kentucky (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CVM N38236
BioSample:
SAMN02699276
BioProject:
PRJNA242614
Submitter:
FDA
Date:
2015/12/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001479725.1 (latest)
RefSeq assembly accession:
GCF_001479725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JYWX01
Assembly method:
CLC Genomics Workbench v. 6.0.2
Genome coverage:
55.3x
Sequencing technology:
Illumina MiSeq

IDs: 601371 [UID] 2737648 [GenBank] 2747068 [RefSeq]

See Genome Information for Salmonella enterica

There are 525610 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/28/2015 09:36:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.9 (rev. 456657)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,776
CDS::4,583
Pseudo Genes::76
CRISPR Arrays::2
rRNAs::21 (5S, 16S, 23S)
tRNAs::79
ncRNA::17
Frameshifted Genes::40
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,913,041
Total ungapped length4,913,041
Number of contigs99
Contig N50148,483
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)99

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,913,041994,913,041148,48300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar KentuckySalmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014334155.1Salmonella enterica subsp. enterica serovar Typhimuriumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014334155.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7489.5890.60
Best-match type98.7489.5890.60

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna