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SMART_313.v1

Organism name:
Enterobacter cloacae subsp. cloacae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SMART_313
BioSample:
SAMN04252900
BioProject:
PRJNA259658
Submitter:
JCVI
Date:
2015/12/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001472135.1 (latest)
RefSeq assembly accession:
GCF_001472135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LPQI01
Assembly method:
SPAdes v. 3.1.1
Expected final version:
yes
Genome coverage:
271.08x
Sequencing technology:
Illumina NextSeq 500

IDs: 597571 [UID] 2729698 [GenBank] 2743848 [RefSeq]

See Genome Information for Enterobacter cloacae

There are 1008 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Enterobacter cloacae" to "Enterobacter cloacae subsp. cloacae" in June 2016.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/17/2015 14:49:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,051
CDS::4,854
Pseudo Genes::136
CRISPR Arrays::1
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::57
ncRNAs::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,296,510
Total ungapped length5,296,510
Number of contigs131
Contig N5094,694
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)131

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,296,5101315,296,51094,69400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter cloacae subsp. cloacaeEnterobacter cloacae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025565.1Enterobacter cloacae subsp. cloacae ATCC 13047type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025565.1Enterobacter cloacaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9085.4680.84
Best-match type98.9085.4680.84

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna