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ASM146539v1

Organism name:
Staphylococcus epidermidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SE4.8
BioSample:
SAMN03097233
BioProject:
PRJNA263224
Submitter:
CSIR-Institute of Microbial Technology
Date:
2015/12/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001465395.1 (latest)
RefSeq assembly accession:
GCF_001465395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JRVQ01
Assembly method:
CLC NGS Cell v. 7.0.3
Expected final version:
no
Genome coverage:
57.0x
Sequencing technology:
Illumina MiSeq

IDs: 594211 [UID] 2721718 [GenBank] 2845518 [RefSeq]

See Genome Information for Staphylococcus epidermidis

There are 4822 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::10/16/2014 08:20:44
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.8 (rev. 448836)
Genes::2,376
CDS::2,260
Pseudo Genes::53
rRNAs::7 (5S, 16S, 23S)
tRNAs::56
ncRNA::0
Frameshifted Genes::20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,484,083
Total ungapped length2,484,083
Number of contigs124
Contig N5048,764
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)124

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,484,0831242,484,08348,76400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidisStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001310935.1Staphylococcus epidermidis JCM 2414type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001310935.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1489.0296.03
Best-match type97.1489.0296.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna