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Actinobaculum massiliense

Organism name:
Actinobaculum massiliense (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FC3
BioSample:
SAMEA3538285
BioProject:
PRJEB10811
Submitter:
URMITE
Date:
2015/11/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly designated as neotype
GenBank assembly accession:
GCA_001457435.1 (latest)
RefSeq assembly accession:
GCF_001457435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CYUL01
Genome coverage:
328x

IDs: 590191 [UID] 2704058 [GenBank] 2716168 [RefSeq]

See Genome Information for Actinobaculum massiliense

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,065,185
Total ungapped length2,064,985
Gaps between scaffolds0
Number of scaffolds4
Scaffold N501,619,143
Scaffold L501
Number of contigs5
Contig N501,063,138
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,065,18542,064,9851,619,14310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinobaculum massilienseActinobaculum massiliense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000160615.1Mobiluncus mulieristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.242.782.39

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected