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WH-SGI-V-07414

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: WH-SGI-V-07414
BioSample:
SAMN04128588
BioProject:
PRJNA297679
Submitter:
Synthetic Genomics Vaccines, Inc.
Date:
2015/11/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001451205.1 (latest)
RefSeq assembly accession:
GCF_001451205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LLPB01
Assembly method:
SGI modified IDBA_UD v. 1.1.1
Genome coverage:
62x
Sequencing technology:
Illumina HiSeq

IDs: 587091 [UID] 2697358 [GenBank] 2710728 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

Pathogen Detection Resources

There are 30234 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Annotation was updated in March 2017

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/07/2017 21:53:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,558
CDS (total)::6,485
Genes (coding)::6,396
CDS (coding)::6,396
Genes (RNA)::73
rRNAs::8, 1, 3 (5S, 16S, 23S)
complete rRNAs::8, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::89
Pseudo Genes (ambiguous residues)::0 of 89
Pseudo Genes (frameshifted)::59 of 89
Pseudo Genes (incomplete)::28 of 89
Pseudo Genes (internal stop)::10 of 89
Pseudo Genes (multiple problems)::8 of 89
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,788,932
Total ungapped length6,788,905
Gaps between scaffolds0
Number of scaffolds81
Scaffold N50352,101
Scaffold L507
Number of contigs82
Contig N50327,145
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,788,932816,788,905352,10110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022496575.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022496575.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4187.1995.33
Best-match type99.4187.1995.33

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna