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ASM143425v1

Organism name:
Lentilactobacillus diolivorans DSM 14421 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 14421
BioSample:
SAMN02369444
BioProject:
PRJNA222257
Submitter:
Shanghai Majorbio
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001434255.1 (latest)
RefSeq assembly accession:
GCF_001434255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZEY01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 578621 [UID] 2581728 [GenBank] 2682718 [RefSeq]

See Genome Information for Lentilactobacillus diolivorans

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,261,379
Total ungapped length3,260,721
Gaps between scaffolds0
Number of scaffolds109
Scaffold N50129,315
Scaffold L508
Number of contigs127
Contig N5084,235
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)109

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,261,3791093,260,721129,315180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lentilactobacillus diolivorans DSM 14421Lentilactobacillus diolivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007992335.1Lentilactobacillus diolivoranstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007992335.1Lentilactobacillus diolivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.7598.89
Best-match type99.9998.7598.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna