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Source database (GenBank or RefSeq) File type

ASM143178v1

Organism name:: Bacillus altitudinis (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: NJ-V2
BioSample:: SAMN04009761
BioProject:: PRJNA293775
Submitter:: BioInformatics Center
Date:: 2015/11/04
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_001431785.1 (latest)
RefSeq assembly accession:: GCF_001431785.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.7
Sequencing technology:: Sanger dideoxy sequencing; Illumina

IDs: 577361 [UID] 2573628 [GenBank] 2597968 [RefSeq]

See Genome Information for Bacillus altitudinis

Pathogen Detection Resources

There are 212 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001431785.1	=	GCF_001431785.1	ASM143178v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Bacillus pumilus" to "Bacillus cellulasensis" in August 2018.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_001431785.1-RS_2024_03_18
Annotation Date::03/18/2024 03:02:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,923
CDSs (total)::3,820
Genes (coding)::3,800
CDSs (with protein)::3,800
Genes (RNA)::103
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::80
ncRNAs::5
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::7 of 20
Pseudo Genes (incomplete)::10 of 20
Pseudo Genes (internal stop)::3 of 20
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##This Genome (query)::GCA_001431785.1
Current Name::Bacillus cellulasensis
Previous Name::Bacillus pumilus
Date Updated::2018-08-29
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_001457015.1
A1 Name::Bacillus cellulasensis
A1 ANI::98.4492%
A1 Query Coverage::92%
A1 Subject Coverage::96.42%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_900186955.1
A2 Name::Bacillus pumilus
A2 ANI::88.8643%
A2 Query Coverage::88.79%
A2 Subject Coverage::87.23%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length	3,787,818
Total ungapped length	3,787,818
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	98.41	92.69	95.43
Best-match type	98.41	92.69	95.43

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ASM143178v1

See Genome Information for Bacillus altitudinis

Pathogen Detection Resources

There are 212 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Taxonomic-Update-Statistics

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Average Nucleotide Identity (ANI) data

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