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3_S3

Organism name:
Campylobacter jejuni (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Campylobacter jejuni
Isolate:
NECK SKIN
BioSample:
SAMEA3556507
BioProject:
PRJEB10936
Submitter:
LSHTM
Date:
2015/10/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001407795.1 (latest)
RefSeq assembly accession:
GCF_001407795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CZII01
Genome coverage:
40x

IDs: 557111 [UID] 2506868 [GenBank] 2672788 [RefSeq]

See Genome Information for Campylobacter jejuni

Pathogen Detection Resources

There are 78985 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,710,943
Total ungapped length1,710,684
Gaps between scaffolds0
Number of scaffolds98
Scaffold N5043,276
Scaffold L5014
Number of contigs114
Contig N5030,488
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)98

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,710,943981,710,68443,276160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter jejuniCampylobacter jejuni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000254515.2Campylobacter jejuni subsp. jejuni ATCC 33560type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254515.2Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7587.7887.69
Best-match type97.7587.7887.69

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna