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PtrICMP9151

Organism name:
Pseudomonas tremae (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ICMP 9151
BioSample:
SAMN03976253
BioProject:
PRJNA292453
Submitter:
University of Toronto
Date:
2015/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001401155.1 (latest)
RefSeq assembly accession:
GCF_001401155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LJRO01
Assembly method:
CLC assembly cell v. 4.2
Genome coverage:
76.53149417x
Sequencing technology:
Illumina MiSeq

IDs: 553481 [UID] 2499138 [GenBank] 2500188 [RefSeq]

See Genome Information for Pseudomonas tremae

There are 12 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,929,145
Total ungapped length5,928,959
Gaps between scaffolds0
Number of scaffolds510
Scaffold N50140,769
Scaffold L5014
Number of contigs520
Contig N50132,018
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)510

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,929,1455105,928,959140,769100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas tremaePseudomonas tremae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000773135.1Pseudomonas coronafacienssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.2183.1790.07

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchassembly is type-material