U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



PspICMP16929

Organism name:
Pseudomonas syringae pv. spinaceae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ICMP 16929
BioSample:
SAMN03976304
BioProject:
PRJNA292453
Submitter:
University of Toronto
Date:
2015/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001401065.1 (latest)
RefSeq assembly accession:
GCF_001401065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LJRI01
Assembly method:
CLC assembly cell v. 4.2
Genome coverage:
16.85273367x
Sequencing technology:
Illumina MiSeq

IDs: 553461 [UID] 2499088 [GenBank] 2632798 [RefSeq]

See Genome Information for Pseudomonas syringae

Pathogen Detection Resources

There are 832 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length6,038,703
Total ungapped length6,038,076
Gaps between scaffolds0
Number of scaffolds1,657
Scaffold N506,205
Scaffold L50295
Number of contigs1,676
Contig N506,193
Contig L50298
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,657

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,038,7031,6576,038,0766,205190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas syringae pv. spinaceaePseudomonas syringae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000233835.2Pseudomonas syringae pv. actinidiae str. NCPPB 3739pathovar

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001401385.1Pseudomonas syringae group genomosp. 3pathovar

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.6076.3177.73
Best-match type98.9383.4683.24

ANI result

Taxonomy check statusBest match statusComment
OKsynonym-matchna