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PcrICMP17001

Organism name:
Pseudomonas syringae pv. coryli (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ICMP 17001
BioSample:
SAMN03976285
BioProject:
PRJNA292453
Submitter:
University of Toronto
Date:
2015/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from pathotype material
GenBank assembly accession:
GCA_001400235.1 (latest)
RefSeq assembly accession:
GCF_001400235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LJQC01
Assembly method:
CLC assembly cell v. 4.2
Genome coverage:
15.01386817x
Sequencing technology:
Illumina MiSeq

IDs: 553021 [UID] 2498138 [GenBank] 2500128 [RefSeq]

See Genome Information for Pseudomonas syringae pv. coryli

Pathogen Detection Resources

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,965,988
Total ungapped length5,965,435
Gaps between scaffolds0
Number of scaffolds1,143
Scaffold N5010,723
Scaffold L50169
Number of contigs1,157
Contig N5010,720
Contig L50170
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,143

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,965,9881,1435,965,43510,723140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas syringae pv. coryliPseudomonas syringae pv. coryli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000972175.1Pseudomonas syringae pv. coryli str. NCPPB 4273pathovar

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000972175.1Pseudomonas syringae pv. corylipathovar

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9698.9796.85
Best-match type99.9698.9796.85

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna