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5237_3#2

Organism name:
Mycobacterium tuberculosis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIR-10
BioSample:
SAMEA961586
BioProject:
PRJEB2221
Submitter:
SC
Date:
2015/07/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001396475.1 (latest)
RefSeq assembly accession:
GCF_001396475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CNAU01
Genome coverage:
100x

IDs: 543631 [UID] 2477528 [GenBank] 2625398 [RefSeq]

See Genome Information for Mycobacterium tuberculosis

There are 7610 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,299,147
Total ungapped length4,298,031
Gaps between scaffolds0
Number of scaffolds333
Scaffold N5045,274
Scaffold L5030
Number of contigs349
Contig N5038,741
Contig L5034
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)333

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,299,1473334,298,03145,274160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium tuberculosisMycobacterium tuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000195955.2Mycobacterium tuberculosis H37Rvtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000195955.2Mycobacterium tuberculosistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9299.0596.51
Best-match type99.9299.0596.51

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna