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8898_8#26

Organism name:
Mycobacterium tuberculosis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2171L
BioSample:
SAMEA1707237
BioProject:
PRJEB2138
Submitter:
SC
Date:
2015/07/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001388035.1 (latest)
RefSeq assembly accession:
GCF_001388035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CPBC01
Genome coverage:
100x

IDs: 539411 [UID] 2469088 [GenBank] 2669068 [RefSeq]

See Genome Information for Mycobacterium tuberculosis

Pathogen Detection Resources

There are 7610 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,350,878
Total ungapped length4,350,106
Gaps between scaffolds0
Number of scaffolds84
Scaffold N50125,157
Scaffold L5013
Number of contigs89
Contig N50121,970
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,350,878844,350,106125,15750

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium tuberculosisMycobacterium tuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003266045.1Mycobacterium tuberculosis H37Rvtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003266045.1Mycobacterium tuberculosistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9198.7298.58
Best-match type99.9198.7298.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna