U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



8898_8#49

Organism name:
Mycobacterium tuberculosis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1537X
BioSample:
SAMEA1707226
BioProject:
PRJEB2138
Submitter:
SC
Date:
2015/07/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001387915.1 (latest)
RefSeq assembly accession:
GCF_001387915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CPBR01
Genome coverage:
100x

IDs: 539351 [UID] 2468968 [GenBank] 2670548 [RefSeq]

See Genome Information for Mycobacterium tuberculosis

Pathogen Detection Resources

There are 7610 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,351,653
Total ungapped length4,351,216
Gaps between scaffolds0
Number of scaffolds88
Scaffold N50125,143
Scaffold L5011
Number of contigs91
Contig N50125,143
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)88

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,351,653884,351,216125,14330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium tuberculosisMycobacterium tuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000195955.2Mycobacterium tuberculosis H37Rvtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000195955.2Mycobacterium tuberculosistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9099.3798.01
Best-match type99.9099.3798.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna