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10540_1#59

Organism name:
Salmonella enterica subsp. enterica serovar Typhi (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ty3-207
BioSample:
SAMEA2159084
BioProject:
PRJEB3215
Submitter:
SC
Date:
2015/04/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • RefSeq annotation failed
GenBank assembly accession:
GCA_001367195.1 (latest)
RefSeq assembly accession:
GCF_001367195.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CVEN01
Genome coverage:
100x

IDs: 529011 [UID] 2448288 [GenBank] 2643178 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 526504 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,028,143
Total ungapped length5,023,675
Gaps between scaffolds0
Number of scaffolds74
Scaffold N50155,118
Scaffold L5010
Number of contigs90
Contig N50122,075
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)74

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,028,143745,023,675155,118160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar TyphiSalmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000006945.2Salmonella enterica subsp. enterica serovar Typhimurium str. LT2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000006945.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5185.1586.40
Best-match type98.5185.1586.40

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna