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8490_2#58

Organism name:
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CH15
Isolate:
CH15
BioSample:
SAMEA1568461
BioProject:
PRJEB2746
Submitter:
SC
Date:
2015/04/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001350035.1 (latest)
RefSeq assembly accession:
GCF_001350035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CGGH01
Genome coverage:
100x

IDs: 520441 [UID] 2431148 [GenBank] 2668848 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 525275 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,946,501
Total ungapped length4,946,487
Gaps between scaffolds0
Number of scaffolds56
Scaffold N50257,851
Scaffold L505
Number of contigs57
Contig N50238,925
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)56

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,946,501564,946,487257,85110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000006945.2Salmonella enterica subsp. enterica serovar Typhimurium str. LT2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000006945.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9697.0596.95
Best-match type99.9697.0596.95

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna