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ASM132008v1

Organism name:
Pseudomonas sp. NBRC 111118 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 111118
BioSample:
SAMD00031653
BioProject:
PRJDB3001
Submitter:
National Institute of Technology and Evaluation
Date:
2015/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001320085.1 (latest)
RefSeq assembly accession:
GCF_001320085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BCAU01
Assembly method:
newbler v. 2.6
Genome coverage:
125x
Sequencing technology:
454 GS-FLX Titanium; Illumina HiSeq 1000

IDs: 505451 [UID] 2401138 [GenBank] 2480748 [RefSeq]

See Genome Information for Pseudomonas sp. NBRC 111118

History (Show revision history)

Comment



Strain NBRC 111118 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).
Members of the genus Pseudomonas are attractive target for genome sequencing due to their clinical importance, metabolic versatility, and ubiquitous distribution in environment. This project aims to support epidemiological studies and ... biotechnological research of Pseudomonas spp. by providing genome sequence data through the NBRC web site and DDBJ/EMBL/GenBank databases.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length6,400,771
Total ungapped length6,400,771
Number of contigs206
Contig N5063,724
Contig L5029
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)206

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,400,7712066,400,77163,72400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas sp. NBRC 111118Pseudomonas sp. NBRC 111118

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000412675.1Pseudomonas putidasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.7169.0271.76

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna