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ASM130819v1

Organism name:
Apilactobacillus kunkeei (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: LMbo
BioSample:
SAMN03277051
BioProject:
PRJNA270973
Submitter:
Uppsala university
Date:
2015/10/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001308195.1 (latest)
RefSeq assembly accession:
GCF_001308195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JXDF01
Assembly method:
Velvet v. 1.1.06
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina MiSeq

IDs: 499431 [UID] 2384598 [GenBank] 2558418 [RefSeq]

See Genome Information for Apilactobacillus kunkeei

Pathogen Detection Resources

There are 147 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,560,079
Total ungapped length1,560,079
Number of contigs31
Contig N5076,251
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)31

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,560,079311,560,07976,25100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Apilactobacillus kunkeeiApilactobacillus kunkeei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001281265.1Apilactobacillus kunkeei DSM 12361 = ATCC 700308type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001281265.1Apilactobacillus kunkeeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.5588.4491.03
Best-match type94.5588.4491.03

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna