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7748_7#44

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 700495
BioSample:
SAMEA1466174
BioProject:
PRJEB2827
Submitter:
SC
Date:
2015/08/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001286165.1 (latest)
RefSeq assembly accession:
GCF_001286165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CYBA01
Genome coverage:
100x

IDs: 482351 [UID] 2318208 [GenBank] 2334308 [RefSeq]

See Genome Information for Escherichia coli

There are 265896 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,453,949
Total ungapped length5,453,949
Number of contigs340
Contig N5064,231
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)340

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,453,9493405,453,94964,23100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010385.1Escherichia coli SE11claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010385.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0280.4585.11
Best-match type99.0280.4585.11

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna