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8205_8#77

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: G100788-1A
BioSample:
SAMEA1527970
BioProject:
PRJEB2226
Submitter:
SC
Date:
2015/08/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001283185.1 (latest)
RefSeq assembly accession:
GCF_001283185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CYGC01
Genome coverage:
100x

IDs: 480861 [UID] 2315228 [GenBank] 2335708 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265156 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length5,666,911
Total ungapped length5,666,721
Gaps between scaffolds0
Number of scaffolds249
Scaffold N50117,016
Scaffold L5017
Number of contigs254
Contig N50117,016
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)249

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,666,9112495,666,721117,01650

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010385.1Escherichia coli SE11claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010385.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9979.2087.07
Best-match type98.9979.2087.07

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna