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Source database (GenBank or RefSeq) File type

103578

Organism name:: Escherichia coli (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: 103578
BioSample:: SAMN02640718
BioProject:: PRJNA237903
Submitter:: University of Maryland, School of Medicine
Date:: 2015/08/11
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
GenBank assembly accession:: GCA_001265715.1 (latest)
RefSeq assembly accession:: GCF_001265715.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JHRY01
Assembly method:: Velvet v. 1.1.04
Genome coverage:: 171x
Sequencing technology:: Illumina HiSeq 2000

IDs: 471711 [UID] 2206798 [GenBank] 2264308 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 264989 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001265715.1	=	GCF_001265715.1	103578	Contig	Latest GenBank, Latest RefSeq

Comment

Source DNA available from Dr. David Rasko, Institute for Genome Sciences, Department of Microbiology and Immunology, School of Medicine, University of Maryland, Baltimore, MD 21201, USA

Global statistics

Total sequence length	5,105,430
Total ungapped length	5,105,430
Number of contigs	376
Contig N50	42,669
Contig L50	32
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	376

	ANI	Query coverage	Subject coverage
Declared type	99.00	86.89	86.04
Best-match type	99.00	86.89	86.04

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103578

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 264989 assemblies for this organism

History (Show revision history)

Comment

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Average Nucleotide Identity (ANI) data

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