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ASM120203v1

Organism name:
Pseudorhodobacter wandonensis (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KCTC 23672
BioSample:
SAMN03785586
BioProject:
PRJNA286976
Submitter:
Korea Polar Research Institute
Date:
2015/08/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001202035.1 (latest)
RefSeq assembly accession:
GCF_001202035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGHT01
Assembly method:
Celera Assembler v. 7
Expected final version:
yes
Genome coverage:
160.0x
Sequencing technology:
Illumina MiSeq

IDs: 438381 [UID] 2047968 [GenBank] 2201728 [RefSeq]

See Genome Information for Pseudorhodobacter wandonensis

History (Show revision history)

Comment

Global statistics

Total sequence length3,887,441
Total ungapped length3,887,441
Number of contigs45
Contig N50316,846
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,887,441453,887,441316,84600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudorhodobacter wandonensisPseudorhodobacter wandonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000420745.1Pseudorhodobacter ferrugineustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.9835.9040.68

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected