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ASM119279v1

Organism name:
Flexilinea flocculi (GNS bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TC1
BioSample:
SAMD00034989
BioProject:
PRJDB4039
Submitter:
National Institute of Advanced Industrial Science and Technology (AIST)
Date:
2015/07/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001192795.1 (latest)
RefSeq assembly accession:
GCF_001192795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBYH01
Assembly method:
SPAdes v. 2.5.0
Genome coverage:
60x
Sequencing technology:
llumina MiSeq

IDs: 433781 [UID] 2038598 [GenBank] 3138938 [RefSeq]

See Genome Information for Flexilinea flocculi

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,510,630
Total ungapped length3,506,484
Gaps between scaffolds0
Number of scaffolds3
Scaffold N502,313,929
Scaffold L501
Number of contigs16
Contig N50478,560
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)16

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,510,63033,506,4842,313,929130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Flexilinea flocculiFlexilinea flocculi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001306035.1Levilinea saccharolyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.531.681.40

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected