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5381_3#2

Organism name:
Streptococcus pneumoniae (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 09B06515
BioSample:
SAMEA682598
BioProject:
PRJEB2255
Submitter:
SC
Date:
2015/07/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001162905.1 (latest)
RefSeq assembly accession:
GCF_001162905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CPNA01
Genome coverage:
100x

IDs: 418701 [UID] 1979978 [GenBank] 2171668 [RefSeq]

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 45864 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,123,616
Total ungapped length2,114,712
Gaps between scaffolds0
Number of scaffolds242
Scaffold N5025,360
Scaffold L5023
Number of contigs274
Contig N5016,093
Contig L5038
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)242

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,123,6162422,114,71225,360320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pneumoniaeStreptococcus pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7086.2286.38
Best-match type98.7086.2286.38

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna