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ASM102376v1

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Pae_CF67.03c
BioSample:
SAMN03566270
BioProject:
PRJNA282164
Submitter:
University of Toronto
Date:
2015/06/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001023765.1 (latest)
RefSeq assembly accession:
GCF_001023765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LDKZ01
Assembly method:
CLC NGS Cell v. 7
Expected final version:
yes
Genome coverage:
42.0x
Sequencing technology:
Illumina

IDs: 348061 [UID] 1802838 [GenBank] 1830158 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

Pathogen Detection Resources

There are 30254 assemblies for this organism

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History (Show revision history)

Comment

We performed a short-term longitudinal, population-level analysis of P. aeruginosa isolated from a single CF patient. 233 P. aeruginosa isolates were collected from twelve sputum specimens obtained over a one-year period for whole-genome sequencing and antimicrobial susceptibility profiling.

Global statistics

Total sequence length6,402,201
Total ungapped length6,401,045
Gaps between scaffolds0
Number of scaffolds174
Scaffold N50121,835
Scaffold L5014
Number of contigs190
Contig N50107,611
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)174

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced6,402,2011746,401,045121,835160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008801675.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008801675.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3693.5193.18
Best-match type99.3693.5193.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna