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ASM100514v1

Organism name:
Jiangella alkaliphila (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: KCTC 19222
BioSample:
SAMN03497963
BioProject:
PRJNA281958
Submitter:
Yunnan Institute of Microbiology
Date:
2015/05/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001005145.1 (latest)
RefSeq assembly accession:
GCF_001005145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LBMC01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 338431 [UID] 1770418 [GenBank] 1771728 [RefSeq]

See Genome Information for Jiangella alkaliphila

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length7,567,836
Total ungapped length7,567,314
Gaps between scaffolds0
Number of scaffolds124
Scaffold N50169,179
Scaffold L5015
Number of contigs162
Contig N50123,230
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)162

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,567,8361247,567,314169,179380

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Jiangella alkaliphilaJiangella alkaliphila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900105925.1Jiangella alkaliphilatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900105925.1Jiangella alkaliphilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.9598.02
Best-match type99.9899.9598.02

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna